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puas mcd8 gfp plasmid  (Addgene inc)


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    Addgene inc puas mcd8 gfp plasmid
    Puas Mcd8 Gfp Plasmid, supplied by Addgene inc, used in various techniques. Bioz Stars score: 92/100, based on 7 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 92 stars, based on 7 article reviews
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    (A) Five-day memory after 7-hour conditioning. ap RNAi was driven by Pdf -GAL4, c929 , and R18F07 . Box plots for a set of CI data show 10th, 25th, 75th, and 90th centiles. In the box plots, the black square in each box indicates the mean, the line in each box is drawn at the median, the white boxes indicate naive males, and the gray boxes indicate conditioned males. CI, courtship index; MI, memory index; N , sample size; U , Mann–Whitney U ; P , probability; **, P < 0.01; ***, P < 0.001; NS, not significant. (B) Five-day memory after 7-hour conditioning. ap RNAi was driven by R14F03 . *, P < 0.05; **, P < 0.01; NS, not significant. (C) l-LNv–specific expression of <t>mCD8::GFP.</t> c929 / R61G12 -LexA; LexAop- FLPL /UAS>STOP> mCD8 :: GFP flies were used. Brains were stained with an anti-Pdf antibody and an anti-GFP antibody. Magenta, Pdf; green, mCD8::GFP. Confocal section images at the level of Pdf neurons of the adult brain. Scale bars represent 10 μm. (D) l-LNv–specific knockdown of ap . Five-day memory after 7-hour conditioning. c929 / R61G12 -LexA; LexAop- FLPL /UAS>STOP> ap RNAi flies were used. **, P < 0.01; NS, not significant. (B and D) Box plots for a set of CI data show fifth, 25th, 75th, and 95th centiles. In the box plots, the black square in each box indicates the mean, the line in each box is drawn at the median, the white boxes indicate naive males, and the gray boxes indicate conditioned males. CI, courtship index; MI, memory index; N , sample size; U , Mann–Whitney U ; P , probability. (A, B, and D). The underlying data can be found in . Ap, Apterous; l-LNv, large ventral–lateral clock neuron; LTM, long-term memory; Pdf, pigment dispersing factor; RNAi, RNA interference.
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    (A) Five-day memory after 7-hour conditioning. ap RNAi was driven by Pdf -GAL4, c929 , and R18F07 . Box plots for a set of CI data show 10th, 25th, 75th, and 90th centiles. In the box plots, the black square in each box indicates the mean, the line in each box is drawn at the median, the white boxes indicate naive males, and the gray boxes indicate conditioned males. CI, courtship index; MI, memory index; N , sample size; U , Mann–Whitney U ; P , probability; **, P < 0.01; ***, P < 0.001; NS, not significant. (B) Five-day memory after 7-hour conditioning. ap RNAi was driven by R14F03 . *, P < 0.05; **, P < 0.01; NS, not significant. (C) l-LNv–specific expression of <t>mCD8::GFP.</t> c929 / R61G12 -LexA; LexAop- FLPL /UAS>STOP> mCD8 :: GFP flies were used. Brains were stained with an anti-Pdf antibody and an anti-GFP antibody. Magenta, Pdf; green, mCD8::GFP. Confocal section images at the level of Pdf neurons of the adult brain. Scale bars represent 10 μm. (D) l-LNv–specific knockdown of ap . Five-day memory after 7-hour conditioning. c929 / R61G12 -LexA; LexAop- FLPL /UAS>STOP> ap RNAi flies were used. **, P < 0.01; NS, not significant. (B and D) Box plots for a set of CI data show fifth, 25th, 75th, and 95th centiles. In the box plots, the black square in each box indicates the mean, the line in each box is drawn at the median, the white boxes indicate naive males, and the gray boxes indicate conditioned males. CI, courtship index; MI, memory index; N , sample size; U , Mann–Whitney U ; P , probability. (A, B, and D). The underlying data can be found in . Ap, Apterous; l-LNv, large ventral–lateral clock neuron; LTM, long-term memory; Pdf, pigment dispersing factor; RNAi, RNA interference.
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    (A) Schematic showing sequences of olfactory circuit assembly in the pupal brain. Abbreviation in this and all subsequent figures: ORN, olfactory receptor neuron; PN, projection neuron; h APF, hours after puparium formation; D, dorsal; V, ventral; M, medial; L, lateral. Dashed vertical lines always indicate the midline of the brain. (B) Schematic showing imaging setting for the antennae–brain explant. (C) A bright-field image shows dissected antennae–brain explant with dorsal side facing upward. Solid and dashed boxes mark the antennal lobes in the brain and one antenna, respectively. (D) Max intensity projections of confocal images from brains dissected at 38h APF (left), 50h APF (middle), and an explant dissected at 38h APF followed by 24h culture ex vivo (right). AM29-GAL4 + ORN axons are sparsely labeled by <t>mCD8-GFP</t> using MARCM. Neuropils are visualized using N- cadherin. Dashed circles in the middle and right images mark the boundaries of DA1, VA1d, and VA1v glomeruli in one of the two antennal lobes in each brain. (E) Images from time-lapse videos taken from a two-photon microscope at the indicated time points of AM29-GAL4;UAS-mCD8-GFP explants dissected at 22h APF (top row) and 30h APF (bottom row). The primordial DM6 and DL4 glomeruli are marked. See for related data.
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    Image Search Results


    REAGENTS AND RESOURCES

    Journal: Nature neuroscience

    Article Title: A rapid and bidirectional reporter of neural activity reveals neural correlates of social behaviors in Drosophila

    doi: 10.1038/s41593-023-01357-w

    Figure Lengend Snippet: REAGENTS AND RESOURCES

    Article Snippet: 38 D. melanogaster : UAS-CanB/B2-shRNA in attP2 TRiP at Harvard Medical School (BDSC) 71 , 72 JF02616 D. melanogaster : UAS-EGFP-shRNA in attP40 TRiP at Harvard Medical School (BDSC) 71 , 72 Bloomington 41552 D. melanogaster : UAS-GCaMP6f in su(Hw)attP5 This study 70 D. melanogaster : SS01165 (R44A02-p65ADZp in attP40; VT033006-ZpG4DBD in attP2) Gift from Y. Aso 22 D. melanogaster : MB027B (R24H08-p65ADZp in attP40; R53F03-ZpG4DBD in attP2) 24 70 D. melanogaster : MB312B (R58E02-p65ADZp in attP40; R10G03-ZpG4DBD in attP2) 24 D. melanogaster : MB296B (R15B01-p65ADZp in attP40; R26F01-ZpG4DBD in attP2) 24 D. melanogaster : MB441B (R30G08-p65ADZp in attP40; R48B03-ZpG4DBD in attP2) 24 D. melanogaster : P1 a -spGAL4 (R15A01-p65ADZp in attP40; R71G01-ZpG4DBD in attP2) Gift from D. Anderson 29 , 30 D. melanogaster : VT037580-GAL4 in attP2 VDRC 70 D. melanogaster : c155 (elav-GAL4) BDSC 73 Bloomington 458 D. melanogaster : Crz-GAL4 Gift from D. Anderson 39 D. melanogaster : CaLexA (LexAop-CD8::GFP-2A-CD8::GFP; UAS-mLexA::VP16::NFAT, LexAop-rCD2::GFP) BDSC 9 Bloomington 66542 D. melanogaster : P1 a -spGAL4, fru 4 - 40 (R15A01-p65ADZp in attP40; R71G01-ZpG4DBD in attP2, fru 4 - 40 ) Gift from K. Asahina 34 D. melanogaster : Fru M Gift from K. Asahina 52 D. melanogaster : fru F Gift from K. Asahina 52 Recombinant DNA pUAST>stop>mCD8-GFP Addgene 24385 pJFRC-MUH Addgene 26213 pJFRC7-20xUAS-IVS-mCD8::GFP Addgene 26220 10xUAS-CRTC::GFP (in pJFRC-MUH) This study 10xUAS-GFP (in pJFRC-MUH) This study 10xUAS-mCD8::mCherry-T2A-nls::LacZ (in pJFRC-MUH) This study 20xUAS-Kir2.1 (no tag) (in pJFRC7 backbone) This study Software and algorithms MATLAB Mathworks Fiji (ImageJ) NIH Subpixel Registration Algorithm ( https://www.mathworks.com/matlabcentral/fileexchange/18401-efficient-subpixel-image-registration-by-cross-correlation ) Mathworks File Exchange 74 UbwonkoNet (ResNet-50 trained for subcellular pixel classification) This study CRTC::GFP NLI Analysis Suite (downloadable from https://github.com/hattorilabutsw/crtctoolkit/releases/ ) This study Open in a separate window REAGENTS AND RESOURCES.

    Techniques: Recombinant, Plasmid Preparation, Software

    REAGENTS AND RESOURCES

    Journal: Nature neuroscience

    Article Title: A rapid and bidirectional reporter of neural activity reveals neural correlates of social behaviors in Drosophila

    doi: 10.1038/s41593-023-01357-w

    Figure Lengend Snippet: REAGENTS AND RESOURCES

    Article Snippet: 38 D. melanogaster : UAS-CanB/B2-shRNA in attP2 TRiP at Harvard Medical School (BDSC) 71 , 72 JF02616 D. melanogaster : UAS-EGFP-shRNA in attP40 TRiP at Harvard Medical School (BDSC) 71 , 72 Bloomington 41552 D. melanogaster : UAS-GCaMP6f in su(Hw)attP5 This study 70 D. melanogaster : SS01165 (R44A02-p65ADZp in attP40; VT033006-ZpG4DBD in attP2) Gift from Y. Aso 22 D. melanogaster : MB027B (R24H08-p65ADZp in attP40; R53F03-ZpG4DBD in attP2) 24 70 D. melanogaster : MB312B (R58E02-p65ADZp in attP40; R10G03-ZpG4DBD in attP2) 24 D. melanogaster : MB296B (R15B01-p65ADZp in attP40; R26F01-ZpG4DBD in attP2) 24 D. melanogaster : MB441B (R30G08-p65ADZp in attP40; R48B03-ZpG4DBD in attP2) 24 D. melanogaster : P1 a -spGAL4 (R15A01-p65ADZp in attP40; R71G01-ZpG4DBD in attP2) Gift from D. Anderson 29 , 30 D. melanogaster : VT037580-GAL4 in attP2 VDRC 70 D. melanogaster : c155 (elav-GAL4) BDSC 73 Bloomington 458 D. melanogaster : Crz-GAL4 Gift from D. Anderson 39 D. melanogaster : CaLexA (LexAop-CD8::GFP-2A-CD8::GFP; UAS-mLexA::VP16::NFAT, LexAop-rCD2::GFP) BDSC 9 Bloomington 66542 D. melanogaster : P1 a -spGAL4, fru 4 - 40 (R15A01-p65ADZp in attP40; R71G01-ZpG4DBD in attP2, fru 4 - 40 ) Gift from K. Asahina 34 D. melanogaster : Fru M Gift from K. Asahina 52 D. melanogaster : fru F Gift from K. Asahina 52 Recombinant DNA pUAST>stop>mCD8-GFP Addgene 24385 pJFRC-MUH Addgene 26213 pJFRC7-20xUAS-IVS-mCD8::GFP Addgene 26220 10xUAS-CRTC::GFP (in pJFRC-MUH) This study 10xUAS-GFP (in pJFRC-MUH) This study 10xUAS-mCD8::mCherry-T2A-nls::LacZ (in pJFRC-MUH) This study 20xUAS-Kir2.1 (no tag) (in pJFRC7 backbone) This study Software and algorithms MATLAB Mathworks Fiji (ImageJ) NIH Subpixel Registration Algorithm ( https://www.mathworks.com/matlabcentral/fileexchange/18401-efficient-subpixel-image-registration-by-cross-correlation ) Mathworks File Exchange 74 UbwonkoNet (ResNet-50 trained for subcellular pixel classification) This study CRTC::GFP NLI Analysis Suite (downloadable from https://github.com/hattorilabutsw/crtctoolkit/releases/ ) This study Open in a separate window REAGENTS AND RESOURCES.

    Techniques: Recombinant, Plasmid Preparation, Software

    (A) Five-day memory after 7-hour conditioning. ap RNAi was driven by Pdf -GAL4, c929 , and R18F07 . Box plots for a set of CI data show 10th, 25th, 75th, and 90th centiles. In the box plots, the black square in each box indicates the mean, the line in each box is drawn at the median, the white boxes indicate naive males, and the gray boxes indicate conditioned males. CI, courtship index; MI, memory index; N , sample size; U , Mann–Whitney U ; P , probability; **, P < 0.01; ***, P < 0.001; NS, not significant. (B) Five-day memory after 7-hour conditioning. ap RNAi was driven by R14F03 . *, P < 0.05; **, P < 0.01; NS, not significant. (C) l-LNv–specific expression of mCD8::GFP. c929 / R61G12 -LexA; LexAop- FLPL /UAS>STOP> mCD8 :: GFP flies were used. Brains were stained with an anti-Pdf antibody and an anti-GFP antibody. Magenta, Pdf; green, mCD8::GFP. Confocal section images at the level of Pdf neurons of the adult brain. Scale bars represent 10 μm. (D) l-LNv–specific knockdown of ap . Five-day memory after 7-hour conditioning. c929 / R61G12 -LexA; LexAop- FLPL /UAS>STOP> ap RNAi flies were used. **, P < 0.01; NS, not significant. (B and D) Box plots for a set of CI data show fifth, 25th, 75th, and 95th centiles. In the box plots, the black square in each box indicates the mean, the line in each box is drawn at the median, the white boxes indicate naive males, and the gray boxes indicate conditioned males. CI, courtship index; MI, memory index; N , sample size; U , Mann–Whitney U ; P , probability. (A, B, and D). The underlying data can be found in . Ap, Apterous; l-LNv, large ventral–lateral clock neuron; LTM, long-term memory; Pdf, pigment dispersing factor; RNAi, RNA interference.

    Journal: PLoS Biology

    Article Title: Consolidation and maintenance of long-term memory involve dual functions of the developmental regulator Apterous in clock neurons and mushroom bodies in the Drosophila brain

    doi: 10.1371/journal.pbio.3001459

    Figure Lengend Snippet: (A) Five-day memory after 7-hour conditioning. ap RNAi was driven by Pdf -GAL4, c929 , and R18F07 . Box plots for a set of CI data show 10th, 25th, 75th, and 90th centiles. In the box plots, the black square in each box indicates the mean, the line in each box is drawn at the median, the white boxes indicate naive males, and the gray boxes indicate conditioned males. CI, courtship index; MI, memory index; N , sample size; U , Mann–Whitney U ; P , probability; **, P < 0.01; ***, P < 0.001; NS, not significant. (B) Five-day memory after 7-hour conditioning. ap RNAi was driven by R14F03 . *, P < 0.05; **, P < 0.01; NS, not significant. (C) l-LNv–specific expression of mCD8::GFP. c929 / R61G12 -LexA; LexAop- FLPL /UAS>STOP> mCD8 :: GFP flies were used. Brains were stained with an anti-Pdf antibody and an anti-GFP antibody. Magenta, Pdf; green, mCD8::GFP. Confocal section images at the level of Pdf neurons of the adult brain. Scale bars represent 10 μm. (D) l-LNv–specific knockdown of ap . Five-day memory after 7-hour conditioning. c929 / R61G12 -LexA; LexAop- FLPL /UAS>STOP> ap RNAi flies were used. **, P < 0.01; NS, not significant. (B and D) Box plots for a set of CI data show fifth, 25th, 75th, and 95th centiles. In the box plots, the black square in each box indicates the mean, the line in each box is drawn at the median, the white boxes indicate naive males, and the gray boxes indicate conditioned males. CI, courtship index; MI, memory index; N , sample size; U , Mann–Whitney U ; P , probability. (A, B, and D). The underlying data can be found in . Ap, Apterous; l-LNv, large ventral–lateral clock neuron; LTM, long-term memory; Pdf, pigment dispersing factor; RNAi, RNA interference.

    Article Snippet: Next, the FRT-stop-FRT cassette (UAS (Addgene, 24385) and then cloned into the pUAST attB vector containing the ap RNAi fragment by using an In-Fusion HD Cloning Kit.

    Techniques: MANN-WHITNEY, Expressing, Staining, Knockdown

    (A, B, and D) ap null /UAS- ap flies were used as a control. Box plots for a set of CI data show 5th, 25th, 75th, and 95th centiles. In the box plots, the black square in each box indicates the mean, the line in each box is drawn at the median, the white boxes indicate naive males, and the gray boxes indicate conditioned males. The underlying data can be found in . CI, courtship index; MI, memory index; N , sample size; U , Mann–Whitney U ; P , probability; *, P < 0.05; ***, P < 0.001; NS, not significant. (A) One-day memory after 7-hour conditioning. (B) Two-day memory after 7-hour conditioning. (C) Stacked confocal image showing an anterior view of the adult brain. The scale bar represents 100 μm. Pdf -GAL4/UAS- mCD8 :: GFP ; R41C10 /+ flies were used. (D) Five-day memory after 7-hour conditioning. Ap, Apterous; LTM, long-term memory; MB, mushroom body; Pdf, pigment dispersing factor.

    Journal: PLoS Biology

    Article Title: Consolidation and maintenance of long-term memory involve dual functions of the developmental regulator Apterous in clock neurons and mushroom bodies in the Drosophila brain

    doi: 10.1371/journal.pbio.3001459

    Figure Lengend Snippet: (A, B, and D) ap null /UAS- ap flies were used as a control. Box plots for a set of CI data show 5th, 25th, 75th, and 95th centiles. In the box plots, the black square in each box indicates the mean, the line in each box is drawn at the median, the white boxes indicate naive males, and the gray boxes indicate conditioned males. The underlying data can be found in . CI, courtship index; MI, memory index; N , sample size; U , Mann–Whitney U ; P , probability; *, P < 0.05; ***, P < 0.001; NS, not significant. (A) One-day memory after 7-hour conditioning. (B) Two-day memory after 7-hour conditioning. (C) Stacked confocal image showing an anterior view of the adult brain. The scale bar represents 100 μm. Pdf -GAL4/UAS- mCD8 :: GFP ; R41C10 /+ flies were used. (D) Five-day memory after 7-hour conditioning. Ap, Apterous; LTM, long-term memory; MB, mushroom body; Pdf, pigment dispersing factor.

    Article Snippet: Next, the FRT-stop-FRT cassette (UAS (Addgene, 24385) and then cloned into the pUAST attB vector containing the ap RNAi fragment by using an In-Fusion HD Cloning Kit.

    Techniques: Control, MANN-WHITNEY

    (A) Schematic showing sequences of olfactory circuit assembly in the pupal brain. Abbreviation in this and all subsequent figures: ORN, olfactory receptor neuron; PN, projection neuron; h APF, hours after puparium formation; D, dorsal; V, ventral; M, medial; L, lateral. Dashed vertical lines always indicate the midline of the brain. (B) Schematic showing imaging setting for the antennae–brain explant. (C) A bright-field image shows dissected antennae–brain explant with dorsal side facing upward. Solid and dashed boxes mark the antennal lobes in the brain and one antenna, respectively. (D) Max intensity projections of confocal images from brains dissected at 38h APF (left), 50h APF (middle), and an explant dissected at 38h APF followed by 24h culture ex vivo (right). AM29-GAL4 + ORN axons are sparsely labeled by mCD8-GFP using MARCM. Neuropils are visualized using N- cadherin. Dashed circles in the middle and right images mark the boundaries of DA1, VA1d, and VA1v glomeruli in one of the two antennal lobes in each brain. (E) Images from time-lapse videos taken from a two-photon microscope at the indicated time points of AM29-GAL4;UAS-mCD8-GFP explants dissected at 22h APF (top row) and 30h APF (bottom row). The primordial DM6 and DL4 glomeruli are marked. See for related data.

    Journal: bioRxiv

    Article Title: Cellular Bases of Olfactory Circuit Assembly Revealed by Systematic Time-lapse Imaging

    doi: 10.1101/2021.05.04.442682

    Figure Lengend Snippet: (A) Schematic showing sequences of olfactory circuit assembly in the pupal brain. Abbreviation in this and all subsequent figures: ORN, olfactory receptor neuron; PN, projection neuron; h APF, hours after puparium formation; D, dorsal; V, ventral; M, medial; L, lateral. Dashed vertical lines always indicate the midline of the brain. (B) Schematic showing imaging setting for the antennae–brain explant. (C) A bright-field image shows dissected antennae–brain explant with dorsal side facing upward. Solid and dashed boxes mark the antennal lobes in the brain and one antenna, respectively. (D) Max intensity projections of confocal images from brains dissected at 38h APF (left), 50h APF (middle), and an explant dissected at 38h APF followed by 24h culture ex vivo (right). AM29-GAL4 + ORN axons are sparsely labeled by mCD8-GFP using MARCM. Neuropils are visualized using N- cadherin. Dashed circles in the middle and right images mark the boundaries of DA1, VA1d, and VA1v glomeruli in one of the two antennal lobes in each brain. (E) Images from time-lapse videos taken from a two-photon microscope at the indicated time points of AM29-GAL4;UAS-mCD8-GFP explants dissected at 22h APF (top row) and 30h APF (bottom row). The primordial DM6 and DL4 glomeruli are marked. See for related data.

    Article Snippet: To generate FLPout reporters pUAS-FRT 100 -stop-FRT 100 -mCD8-GFP and pUAS-FRT 10 -stop-FRT 10 -mCD8- GFP constructs , we PCR amplified the transcriptional terminator, stop, sequence from pUAST>stop>mCD8-GFP (addgene #24385, ) and subcloned into pJFRC7-20XUAS-IVS- mCD8-GFP (addgene # 26220, ) through NotI and XhoI.

    Techniques: Imaging, Ex Vivo, Labeling, Microscopy

    (A) Max intensity projection confocal images from explants (top row) or brains in vivo (bottom row). AM29-GAL4 + MARCM clones are labeled by expression of mCD8-GFP. Arrows mark ectopic targeting of AM29-GAL4 + ORN axons to ventral or lateral side of DM6 in both explants and in vivo. (B) Quantifications of ectopic targeting of MARCM clones of AM29-GAL4 + ORN axons during development in vivo and ex vivo. (C) Images from time-lapse videos taken by a two-photon microscope from pebbled-GAL4;UAS-mCD8- GFP explant at indicated time points. (D) Max intensity projection confocal images from 3 rd antennal segment at 48h APF. Different heat shock time induces different number of AM29-GAL4 + ORNs by UAS-FRT 10 -stop-FRT 10 -mCD8-GFP reporter.

    Journal: bioRxiv

    Article Title: Cellular Bases of Olfactory Circuit Assembly Revealed by Systematic Time-lapse Imaging

    doi: 10.1101/2021.05.04.442682

    Figure Lengend Snippet: (A) Max intensity projection confocal images from explants (top row) or brains in vivo (bottom row). AM29-GAL4 + MARCM clones are labeled by expression of mCD8-GFP. Arrows mark ectopic targeting of AM29-GAL4 + ORN axons to ventral or lateral side of DM6 in both explants and in vivo. (B) Quantifications of ectopic targeting of MARCM clones of AM29-GAL4 + ORN axons during development in vivo and ex vivo. (C) Images from time-lapse videos taken by a two-photon microscope from pebbled-GAL4;UAS-mCD8- GFP explant at indicated time points. (D) Max intensity projection confocal images from 3 rd antennal segment at 48h APF. Different heat shock time induces different number of AM29-GAL4 + ORNs by UAS-FRT 10 -stop-FRT 10 -mCD8-GFP reporter.

    Article Snippet: To generate FLPout reporters pUAS-FRT 100 -stop-FRT 100 -mCD8-GFP and pUAS-FRT 10 -stop-FRT 10 -mCD8- GFP constructs , we PCR amplified the transcriptional terminator, stop, sequence from pUAST>stop>mCD8-GFP (addgene #24385, ) and subcloned into pJFRC7-20XUAS-IVS- mCD8-GFP (addgene # 26220, ) through NotI and XhoI.

    Techniques: In Vivo, Clone Assay, Labeling, Expressing, Ex Vivo, Microscopy

    (A) Schematic showing strategy of sparse labeling using FLPout with mutant FRT sites with reduced recombination efficiency. The C→G mutation (magenta) in the FRT site reduces recombination efficiency by ∼100 fold. (B) Max intensity projections of confocal images showing four ORNs labeled in hsFLP,pebbled- GAL4;UAS-FRT 100 -stop-FRT 100 -mCD8- GFP/+ adult brain after heat shock for 30 min at 0h APF (left). The number of labeled ORNs are quantified by different times of heat-shock (hs, right). Green signal in the midline region is from non-specific staining at the surface of the brain. (C) Example images from time-lapse videos taken from a two-photon microscope at the indicated time points of sparsely labeled ORN axons in pebbled-GAL4,hsFLP;UAS-FRT 100 -stop-FRT 100 -mCD8-GFP explant. Axons from different ORNs were followed through time-lapse videos and pseudo-colored manually. (D) Max intensity projections of confocal images of the posterior and anterior antennal lobes from the fixed explant shown in (C) following 24h culture. The genetic identity of each axon was identified by its glomerular target. (E) A summary table for single ORNs live-imaged for each type, with the number of imaged single ORNs indicated. (F) An antennal lobe map with glomeruli corresponding to imaged ORNs labeled. Dark and light red glomeruli represent ORN types with >3 and <3 ORNs imaged, respectively. See Figures S2 and S3 for related data.

    Journal: bioRxiv

    Article Title: Cellular Bases of Olfactory Circuit Assembly Revealed by Systematic Time-lapse Imaging

    doi: 10.1101/2021.05.04.442682

    Figure Lengend Snippet: (A) Schematic showing strategy of sparse labeling using FLPout with mutant FRT sites with reduced recombination efficiency. The C→G mutation (magenta) in the FRT site reduces recombination efficiency by ∼100 fold. (B) Max intensity projections of confocal images showing four ORNs labeled in hsFLP,pebbled- GAL4;UAS-FRT 100 -stop-FRT 100 -mCD8- GFP/+ adult brain after heat shock for 30 min at 0h APF (left). The number of labeled ORNs are quantified by different times of heat-shock (hs, right). Green signal in the midline region is from non-specific staining at the surface of the brain. (C) Example images from time-lapse videos taken from a two-photon microscope at the indicated time points of sparsely labeled ORN axons in pebbled-GAL4,hsFLP;UAS-FRT 100 -stop-FRT 100 -mCD8-GFP explant. Axons from different ORNs were followed through time-lapse videos and pseudo-colored manually. (D) Max intensity projections of confocal images of the posterior and anterior antennal lobes from the fixed explant shown in (C) following 24h culture. The genetic identity of each axon was identified by its glomerular target. (E) A summary table for single ORNs live-imaged for each type, with the number of imaged single ORNs indicated. (F) An antennal lobe map with glomeruli corresponding to imaged ORNs labeled. Dark and light red glomeruli represent ORN types with >3 and <3 ORNs imaged, respectively. See Figures S2 and S3 for related data.

    Article Snippet: To generate FLPout reporters pUAS-FRT 100 -stop-FRT 100 -mCD8-GFP and pUAS-FRT 10 -stop-FRT 10 -mCD8- GFP constructs , we PCR amplified the transcriptional terminator, stop, sequence from pUAST>stop>mCD8-GFP (addgene #24385, ) and subcloned into pJFRC7-20XUAS-IVS- mCD8-GFP (addgene # 26220, ) through NotI and XhoI.

    Techniques: Labeling, Mutagenesis, Staining, Microscopy

    (A) Schematic illustrating unilateral antennal nerve severing prior to explant culture. (B) I mages from time - lapse videos taken at the indicated time points using a two-photon microscope from pebbled-GAL4/hsFLP; UAS-FRT 100 -stop-FRT 100 -mCD8-GFP/+ explant. Sparsely labeled axons from uncut (red) and cut (yellow) antennae following unilateral antennal nerve severing are shown. Dashed vertical lines indicate midlines, the same as in other images in this figure. (C) Max intensity projection confocal images from four pebbled-GAL4/hsFLP; UAS-FRT 100 -stop- FRT 100 -mCD8-GFP/+ explants with unilateral antennal nerve severed at 18h, 24h, 30h, and 34h APF, respectively, followed by 24h culture before fixation and staining with anti-GFP and anti-N-cadherin. Solid arrow denotes uncut axons exiting the antennal lobe dorsally. Open arrows denote the asymmetric targeting of single ORN axons in the ipsilateral and contralateral antennal lobes from the same ORN axon. (D) Quantification of fractions of single ORN axons that exhibit targeting outside the antennal lobe (AL), asymmetric targeting, and symmetric targeting of the uncut ORN axons, from explants with one antennal nerve cut at 18h, 24h, 30h and 34h APF (images in C). Numbers in the column indicate the number of axons quantified. (E) Max intensity projection confocal images from AM29-GAL4,UAS-mCD8-GFP explants with unilateral antennal nerve severed at 30h APF, followed by 24h culture before fixation and staining with anti-GFP and anti-N-cadherin. Solid arrows and arrowheads mark contralateral mis-targeting of DM6 and DL4 axons respectively. Open arrows mark DM6 and DL4 glomeruli. Mis-targeting of AM29+ ORN axons was observed in 12 out of 14 contralateral antennal lobes. See for related data.

    Journal: bioRxiv

    Article Title: Cellular Bases of Olfactory Circuit Assembly Revealed by Systematic Time-lapse Imaging

    doi: 10.1101/2021.05.04.442682

    Figure Lengend Snippet: (A) Schematic illustrating unilateral antennal nerve severing prior to explant culture. (B) I mages from time - lapse videos taken at the indicated time points using a two-photon microscope from pebbled-GAL4/hsFLP; UAS-FRT 100 -stop-FRT 100 -mCD8-GFP/+ explant. Sparsely labeled axons from uncut (red) and cut (yellow) antennae following unilateral antennal nerve severing are shown. Dashed vertical lines indicate midlines, the same as in other images in this figure. (C) Max intensity projection confocal images from four pebbled-GAL4/hsFLP; UAS-FRT 100 -stop- FRT 100 -mCD8-GFP/+ explants with unilateral antennal nerve severed at 18h, 24h, 30h, and 34h APF, respectively, followed by 24h culture before fixation and staining with anti-GFP and anti-N-cadherin. Solid arrow denotes uncut axons exiting the antennal lobe dorsally. Open arrows denote the asymmetric targeting of single ORN axons in the ipsilateral and contralateral antennal lobes from the same ORN axon. (D) Quantification of fractions of single ORN axons that exhibit targeting outside the antennal lobe (AL), asymmetric targeting, and symmetric targeting of the uncut ORN axons, from explants with one antennal nerve cut at 18h, 24h, 30h and 34h APF (images in C). Numbers in the column indicate the number of axons quantified. (E) Max intensity projection confocal images from AM29-GAL4,UAS-mCD8-GFP explants with unilateral antennal nerve severed at 30h APF, followed by 24h culture before fixation and staining with anti-GFP and anti-N-cadherin. Solid arrows and arrowheads mark contralateral mis-targeting of DM6 and DL4 axons respectively. Open arrows mark DM6 and DL4 glomeruli. Mis-targeting of AM29+ ORN axons was observed in 12 out of 14 contralateral antennal lobes. See for related data.

    Article Snippet: To generate FLPout reporters pUAS-FRT 100 -stop-FRT 100 -mCD8-GFP and pUAS-FRT 10 -stop-FRT 10 -mCD8- GFP constructs , we PCR amplified the transcriptional terminator, stop, sequence from pUAST>stop>mCD8-GFP (addgene #24385, ) and subcloned into pJFRC7-20XUAS-IVS- mCD8-GFP (addgene # 26220, ) through NotI and XhoI.

    Techniques: Microscopy, Labeling, Staining

    (A) Projection of confocal images (left 3 images) or single optical section (right 2 images) from pebbled-GAL4,UAS-mCD8-GFP brains dissected at indicated time points, showing different developmental stages of ORN axons in the antennal lobe. GFP (green) and N-cadherin (red) were labeled. (B) Quantification of contralateral mistargeting and correct targeting of uncut ORN axons upon unilateral antennal nerve severing shown in an antennal lobe map with the ipsilateral branching waiting time i indicated with different green colors. First and second numbers in a bracket indicate the number of single axons that mistarget and target correctly from each type, respectively. All cases quantified were from explants with one antennal nerve severed at 30h APF followed by 24h culture ex vivo.

    Journal: bioRxiv

    Article Title: Cellular Bases of Olfactory Circuit Assembly Revealed by Systematic Time-lapse Imaging

    doi: 10.1101/2021.05.04.442682

    Figure Lengend Snippet: (A) Projection of confocal images (left 3 images) or single optical section (right 2 images) from pebbled-GAL4,UAS-mCD8-GFP brains dissected at indicated time points, showing different developmental stages of ORN axons in the antennal lobe. GFP (green) and N-cadherin (red) were labeled. (B) Quantification of contralateral mistargeting and correct targeting of uncut ORN axons upon unilateral antennal nerve severing shown in an antennal lobe map with the ipsilateral branching waiting time i indicated with different green colors. First and second numbers in a bracket indicate the number of single axons that mistarget and target correctly from each type, respectively. All cases quantified were from explants with one antennal nerve severed at 30h APF followed by 24h culture ex vivo.

    Article Snippet: To generate FLPout reporters pUAS-FRT 100 -stop-FRT 100 -mCD8-GFP and pUAS-FRT 10 -stop-FRT 10 -mCD8- GFP constructs , we PCR amplified the transcriptional terminator, stop, sequence from pUAST>stop>mCD8-GFP (addgene #24385, ) and subcloned into pJFRC7-20XUAS-IVS- mCD8-GFP (addgene # 26220, ) through NotI and XhoI.

    Techniques: Labeling, Ex Vivo

    (A) Schematic showing bilateral antennal nerve cutting. (B) Glomerular maps showing PN types labeled by single-cell MARCM clones (DL1) or by two split- GAL4s. (C) Max intensity projection confocal images of split7-GAL4;UAS-mCD8-GFP explants cultured for 24h with two antennae nerve intact or severed at the time of dissection at 20h. The bottom panels show split7-GAL4;UAS-mCD8-GFP brains dissected at 20h APF and 30h APF in vivo.

    Journal: bioRxiv

    Article Title: Cellular Bases of Olfactory Circuit Assembly Revealed by Systematic Time-lapse Imaging

    doi: 10.1101/2021.05.04.442682

    Figure Lengend Snippet: (A) Schematic showing bilateral antennal nerve cutting. (B) Glomerular maps showing PN types labeled by single-cell MARCM clones (DL1) or by two split- GAL4s. (C) Max intensity projection confocal images of split7-GAL4;UAS-mCD8-GFP explants cultured for 24h with two antennae nerve intact or severed at the time of dissection at 20h. The bottom panels show split7-GAL4;UAS-mCD8-GFP brains dissected at 20h APF and 30h APF in vivo.

    Article Snippet: To generate FLPout reporters pUAS-FRT 100 -stop-FRT 100 -mCD8-GFP and pUAS-FRT 10 -stop-FRT 10 -mCD8- GFP constructs , we PCR amplified the transcriptional terminator, stop, sequence from pUAST>stop>mCD8-GFP (addgene #24385, ) and subcloned into pJFRC7-20XUAS-IVS- mCD8-GFP (addgene # 26220, ) through NotI and XhoI.

    Techniques: Labeling, Clone Assay, Cell Culture, Dissection, In Vivo

    (A, B) Images from time - lapse videos taken from explants dissected at 23h APF (A) or 30h APF (B) using a two-photon microscope, showing dynamics of dendrite terminals across time from a single DL1 PN in each case. Images are partial projection, some of which include the DL1 PN cell body (arrowheads). Arrows denote a dynamic terminal branch exploring local area. Arrowheads mark residual signal from PN cell bodies. (C–F) Max intensity projection confocal images of split15-GAL4;UAS-mCD8-GFP brains dissected at 20h APF in vivo (C), 30h APF in vivo (D), and explants dissected from 20h APF in vivo and cultured for 24h with both antennal nerves (AN) intact (E) or cut (F) at the time of dissection. (G) Single confocal image sections of split15-GAL4;UAS-mCD8GFP explants cultured for 24h after dissected at 30h APF with antennae nerve intact or severed at the time of dissection. The dashed line marks a newly formed glomerulus. (H–J) Quantification of split15-GAL4 + PN dendritic volume (H), total antennal lobe volume (I), and the percentage of split15-GAL4 + PN dendritic volume in total antennal lobe (J) from the four conditions indicated, corresponding to panels C–F. Quantifications were done using one-way ANOVA. **: P<0.01, ***: P<0.001. See for related data.

    Journal: bioRxiv

    Article Title: Cellular Bases of Olfactory Circuit Assembly Revealed by Systematic Time-lapse Imaging

    doi: 10.1101/2021.05.04.442682

    Figure Lengend Snippet: (A, B) Images from time - lapse videos taken from explants dissected at 23h APF (A) or 30h APF (B) using a two-photon microscope, showing dynamics of dendrite terminals across time from a single DL1 PN in each case. Images are partial projection, some of which include the DL1 PN cell body (arrowheads). Arrows denote a dynamic terminal branch exploring local area. Arrowheads mark residual signal from PN cell bodies. (C–F) Max intensity projection confocal images of split15-GAL4;UAS-mCD8-GFP brains dissected at 20h APF in vivo (C), 30h APF in vivo (D), and explants dissected from 20h APF in vivo and cultured for 24h with both antennal nerves (AN) intact (E) or cut (F) at the time of dissection. (G) Single confocal image sections of split15-GAL4;UAS-mCD8GFP explants cultured for 24h after dissected at 30h APF with antennae nerve intact or severed at the time of dissection. The dashed line marks a newly formed glomerulus. (H–J) Quantification of split15-GAL4 + PN dendritic volume (H), total antennal lobe volume (I), and the percentage of split15-GAL4 + PN dendritic volume in total antennal lobe (J) from the four conditions indicated, corresponding to panels C–F. Quantifications were done using one-way ANOVA. **: P<0.01, ***: P<0.001. See for related data.

    Article Snippet: To generate FLPout reporters pUAS-FRT 100 -stop-FRT 100 -mCD8-GFP and pUAS-FRT 10 -stop-FRT 10 -mCD8- GFP constructs , we PCR amplified the transcriptional terminator, stop, sequence from pUAST>stop>mCD8-GFP (addgene #24385, ) and subcloned into pJFRC7-20XUAS-IVS- mCD8-GFP (addgene # 26220, ) through NotI and XhoI.

    Techniques: Microscopy, In Vivo, Cell Culture, Dissection